21697 Bac_rhamnosid superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21697 chr_3 Bac_rhamnosid superfamily 690064 693815 + Bac_rhamnosid superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7444727 Thaps21697.1, Thaps21697.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0443

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0014
 0.46

Most Highly Correlated Transcripts

25653

hypothetical protein
0.8876

7426

hypothetical protein
0.8786

9860

hypothetical protein
0.8779

3660

COG5038
0.8772

7545

hypothetical protein
0.8766

263051

ZntA
0.8707

6734

hypothetical protein
0.8669

3331

Bac_rhamnosid superfamily
0.8669

3502

hypothetical protein
0.8665

34571

SNF2_N
0.8663

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Bac_rhamnosid superfamily Bacterial alpha-L-rhamnosidase; This family consists of bacterial rhamnosidase A and B enzymes. L-... - 197.494 8.91E-54 547 - 1182 superfamily 253267
Bac_rhamnosid_N superfamily Alpha-L-rhamnosidase N-terminal domain; This family consists of bacterial rhamnosidase A and B... - 96.5964 1.92E-22 305 - 465 superfamily 254858

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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