21795 SCP superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21795 chr_3 SCP superfamily 1173219 1175712 + SCP superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0391

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0273
 0.40

Most Highly Correlated Transcripts

bd884

(bd884) NA
0.8886

263313

Peptidase_M8 superfamily
0.8784

bd694

(bd694) NA
0.8703

23976

SBF superfamily
0.8642

23624

SCP superfamily
0.8599

1344

SCP superfamily
0.8552

bd1954

(bd1954) NA
0.8535

24818

hypothetical protein
0.8484

261820

PKc_like superfamily
0.8473

bd833

(bd833) NA
0.8448

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SCP superfamily SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family... - 84.1838 4.91E-19 465 - 598 superfamily 260208

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre01.g045000.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005576 -

GO:0005576

extracellular region

Details: 
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO Category: 
CC

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