21871 (RSP1) PTZ00254
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
21871 chr_3 (RSP1) PTZ00254 1542376 1543541 + PTZ00254
NCBI ID Ensembl Genomes exon ID
7451308 Thaps21871.1, Thaps21871.2
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0047
Normalized Mean Residue
Thaps_bicluster_0227
0.33
(RL9) PTZ00027
0.8087
(bd756) NA
0.7831
(bd1221) recQ_fam
0.7716
(RL7) Ribosomal_L7_archeal_euk
0.769
(bd258) HU
0.7597
PTZ00084
0.754
(RS6) Ribosomal_S6e superfamily
0.7401
RRM_SF superfamily
0.7393
(bd1360) ycf24
0.7393
(bd1828) NA
0.7355
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it... cl00315 213.983 1.81E-69 21 - 187 specific 100106
RPS2 superfamily Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it... - 213.983 1.81E-69 21 - 187 superfamily 260347
PTZ00254 40S ribosomal protein SA; Provisional - 409.063 3.00E-145 5 - 243 multi-dom 240331
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_13682 PHATRDRAFT_13682 269442 196094 356503 Cre10.g432800.t1.2 AT1G72370.2 285573
KEGG description KEGG Pathway
Ribosome map03010
GO:0003735 GO:0005622 GO:0005840 GO:0006412 GO:0015935 -

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

small ribosomal subunit

Details: 
The smaller of the two subunits of a ribosome.
GO Category: 
CC
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