bd1360 (bd1360) ycf24Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
bd1360	bd_26x41	(bd1360) ycf24	53197	54654	-	ycf24

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0069

Most Highly Correlated Transcripts

ThpsCp010 (ycf24) putative ABC transporter 1	bd1319 (bd1319) ycf16 0.9804	ThpsCp011 (ycf16) sulfate ABC transporter protein 0.9804	bd1720 (bd1720) ftsH 0.961	ThpsCp046 (ftsH) cell division protein 0.961	ThpsCp083 (ycf46) Ycf46 0.9592
ThpsCp133 (ycf46) Ycf46 0.9592	ThpsCt001 (trnM(cau)) 0.9458	bd1023 (bd1023) atpD 0.9457	ThpsCp016 (atpD) ATP synthase CF1 delta subunit 0.9457

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UPF0051		Uncharacterized protein family (UPF0051); Uncharacterized protein family (UPF0051).	cl19515	213.597	1.14E-65	218 - 456	specific	250635
UPF0051 superfamily		Uncharacterized protein family (UPF0051); Uncharacterized protein family (UPF0051).	-	213.597	1.14E-65	218 - 456	superfamily	267868
ycf24		putative ABC transporter	-	987.206	0	1 - 485	multi-dom	214359

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Cre15.g643600.t1.2	AT4G04770.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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