21911 PH-like superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21911 chr_3 PH-like superfamily 1738554 1740024 + PH-like superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449548 Thaps21911.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0199

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0098
 0.36

Most Highly Correlated Transcripts

38129

(RPN5) PCI superfamily
0.894

33725

(RPN11) MPN_RPN11_CSN5
0.8855

34219

hypothetical protein
0.8786

269593

(RPT4) RPT1
0.8685

264377

(PSB7) proteasome_beta_type_7
0.8436

25517

hypothetical protein
0.8303

34018

RPN7
0.8278

260936

HCO3_cotransp superfamily
0.8266

11286

hypothetical protein
0.8256

26239

(RPN1) RPN1
0.8196

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PH-like superfamily Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like and... - 87.3279 6.34E-21 35 - 161 superfamily 266526

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49969 PHATRDRAFT_49969 263178 308894 Not available Not available Not available 564524

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0007155 GO:0016021 -

GO:0007155

cell adhesion

Details: 
The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

Add comment

Log in to post comments