21943 Gar1 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21943 chr_3 Gar1 superfamily 1880375 1882571 + Gar1 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7445351 Thaps21943.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0226

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0184
 0.33

Most Highly Correlated Transcripts

bd1828

(bd1828) NA
0.8816

22918

hypothetical protein
0.8678

8261

DUF819 superfamily
0.8641

34782

HrpA
0.8598

2128

hypothetical protein
0.8592

23442

hypothetical protein
0.8522

34505

hypothetical protein
0.8487

263650

NAD_binding_8 superfamily
0.8486

5796

hypothetical protein
0.8468

23306

hypothetical protein
0.8363

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Gar1 superfamily Gar1/Naf1 RNA binding region; Gar1 is a small nucleolar RNP that is required for pre-mRNA... - 66.5413 8.23E-13 466 - 527 superfamily 260872

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd1667 PHATRDRAFT_bd1667 253770 287422 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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