22603 COG3899Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22603	chr_5	COG3899	444640	448077	+	COG3899

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449689	Thaps22603.5, Thaps22603.4, Thaps22603.3, Thaps22603.1, Thaps22603.6, Thaps22603.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0377

Most Highly Correlated Transcripts

21268 zf-CXXC 0.9368	262371 AAA_12 superfamily 0.926	1057 PIH1 superfamily 0.9256	21220 KU superfamily 0.9196	12836 EEP superfamily 0.9163	1042 hypothetical protein 0.9159
22620 (Tp_AP2-EREBP1) regulator [Rayko] 0.9149	25270 hypothetical protein 0.9147	262619 Spc97_Spc98 0.914	5760 SART-1 0.9138

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_16		AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	cl18944	74.0361	5.31E-15	36 - 267	specific	257559
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	74.0361	5.31E-15	36 - 267	superfamily	267297
COG3899		Predicted ATPase [General function prediction only]	-	231.133	9.22E-64	66 - 911	multi-dom	226415

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 -

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