22618 SF1_like-KHThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22618	chr_5	SF1_like-KH	493826	496378	+	SF1_like-KH

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451763	Thaps22618.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0315

Most Highly Correlated Transcripts

12836 EEP superfamily 0.9036	22284 Nudix_Hydrolase superfamily 0.8977	270030 HECTc 0.8922	25451 AAA superfamily 0.8901	23150 FAAL 0.8899	7261 hypothetical protein 0.8873
5689 HA 0.8846	22688 hypothetical protein 0.8809	25307 hypothetical protein 0.8801	24580 hypothetical protein 0.8799

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SF1_like-KH		Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically...	cl17245	148.931	7.50E-42	290 - 405	specific	239088
KH-I superfamily		K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide...	-	148.931	7.50E-42	290 - 405	superfamily	266583

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	186876	253158	228949	Cre09.g386731.t1.1	AT5G51300.3	483336

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 -

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