22623 KH-I
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22623 chr_5 KH-I 517320 520343 - KH-I

Synonyms

NCBI ID Ensembl Genomes exon ID
7451766 Thaps22623.3, Thaps22623.1, Thaps22623.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0306

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0229
 0.40

Most Highly Correlated Transcripts

bd1890

(bd1890) NA
0.9032

bd1692

(bd1692) NA
0.8805

22618

SF1_like-KH
0.871

22580

hypothetical protein
0.8607

24465

hypothetical protein
0.8546

21558

hypothetical protein
0.8489

23096

hypothetical protein
0.8428

262616

(MYB22)
0.8331

269586

hypothetical protein
0.8297

20970

SpoVK
0.8284

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
KH-I K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide... cl17245 59.1107 5.25E-11 478 - 532 specific 238053
KH-I superfamily K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide... - 59.1107 5.25E-11 478 - 532 superfamily 266583
KH-I K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide... cl17245 59.1107 5.25E-11 478 - 532 specific 238053
KH-I superfamily K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide... - 59.1107 5.25E-11 478 - 532 superfamily 266583
KH-I K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide... cl17245 59.1107 5.25E-11 478 - 532 specific 238053
KH-I superfamily K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide... - 59.1107 5.25E-11 478 - 532 superfamily 266583

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 243628 183165 Not available Cre06.g250800.t1.1 AT1G33680.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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