22850 DUF4239Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22850	chr_5	DUF4239	1726326	1729250	-	DUF4239

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448194	Thaps22850.4, Thaps22850.2, Thaps22850.1, Thaps22850.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0142

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0280	0.36	1.3 15

Most Highly Correlated Transcripts

11294 XendoU 0.9432	21722 Aldo_ket_red 0.9426	2310 hypothetical protein 0.937	11693 tRNA_SAD superfamily 0.928	bd706 (bd706) NA 0.9208	28148 (NIT2) nit 0.9204
1985 hypothetical protein 0.9114	10059 hypothetical protein 0.9114	19435 PTZ00184 0.9112	20665 hypothetical protein 0.911

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF4239 superfamily		Protein of unknown function (DUF4239); This family of proteins is functionally uncharacterized....	-	219.942	8.40E-66	182 - 400	superfamily	258258
DUF4239 superfamily		Protein of unknown function (DUF4239); This family of proteins is functionally uncharacterized....	-	219.942	8.40E-66	182 - 400	superfamily	258258

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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