22985 WD40 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22985 chr_6 WD40 superfamily 357209 358966 - WD40 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7451142 Thaps22985.3, Thaps22985.2, Thaps22985.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0199
 0.24

Most Highly Correlated Transcripts

23336

SRP40_C superfamily
0.9507

23354

RNA-binding protein of the pumilio family
0.9506

268688

hypothetical protein
0.9502

bd1876

(bd1876) NatB_MDM20 superfamily
0.9441

268735

(GPB1) WD40
0.9406

22672

hypothetical protein
0.9397

29018

NMD3
0.9334

1835

hypothetical protein
0.9321

40223

PLN02347
0.9316

25129

hypothetical protein
0.9297

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 99.3316 1.63E-23 146 - 499 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 77.0511 2.08E-15 162 - 492 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43574 PHATRDRAFT_43574 240159 286493 62524 Cre17.g710100.t1.1 AT5G15550.1 563571

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments