23247 choice_anch_BThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23247	chr_6	choice_anch_B	1581599	1586886	+	choice_anch_B

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442765	Thaps23247.10, Thaps23247.2, Thaps23247.9, Thaps23247.4, Thaps23247.6, Thaps23247.11, Thaps23247.7, Thaps23247.3, Thaps23247.1, Thaps23247.8, Thaps23247.5

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0083

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0013	0.47	0.036 65

Most Highly Correlated Transcripts

22767 TM_PBP1_branched-chain-AA_like superfamily 0.8781	24333 hypothetical protein 0.8577	34878 Abhydrolase_5 0.8562	21582 hypothetical protein 0.8534	3279 hypothetical protein 0.8519	263997 (APA1) Adaptin_N 0.8472
23191 hypothetical protein 0.8392	3085 hypothetical protein 0.8253	22486 hypothetical protein 0.8236	bd1755 (bd1755) NA 0.8191

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
choice_anch_B		choice-of-anchor B domain; This domain, about 385 amino acids long, can have either of at least two...	-	163.66	2.41E-43	160 - 526	multi-dom	234536

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
33021		Not available	170890	198113	434018	Not available	AT1G43670.1	354389

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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