23971 zf-UBRThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23971	chr_9	zf-UBR	467630	478446	-	zf-UBR

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449325	Thaps23971.5, Thaps23971.3, Thaps23971.1, Thaps23971.4, Thaps23971.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0448

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0053	0.56

Most Highly Correlated Transcripts

24035 Peptidase_C19 superfamily 0.9315	263610 COG3899 0.9265	5788 TFIIS_M 0.9205	24852 hypothetical protein 0.905	21122 Nipped-B_C 0.9016	23582 hypothetical protein 0.9003
22112 Vps54 superfamily 0.9002	22922 hypothetical protein 0.8986	24335 hypothetical protein 0.898	21158 hypothetical protein 0.8967

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
zf-UBR		Putative zinc finger in N-recognin (UBR box); This region is found in E3 ubiquitin ligases that...	cl19744	107.841	7.63E-27	370 - 437	specific	251157
zf-UBR superfamily		Putative zinc finger in N-recognin (UBR box); This region is found in E3 ubiquitin ligases that...	-	107.841	7.63E-27	370 - 437	superfamily	268097

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_37731	PHATRDRAFT_37731	267866	291151	Not available	Cre02.g089237.t1.1	Not available	530881

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004842 GO:0006512 -

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