23988 DUF1800 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23988	chr_9	DUF1800 superfamily	554123	565635	-	DUF1800 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443554	Thaps23988.22, Thaps23988.20, Thaps23988.10, Thaps23988.3, Thaps23988.14, Thaps23988.1, Thaps23988.5, Thaps23988.4, Thaps23988.26, Thaps23988.11, Thaps23988.24, Thaps23988.9, Thaps23988.25, Thaps23988.21, Thaps23988.6, Thaps23988.12, Thaps23988.19, Thaps23988.2, Thaps23988.8, Thaps23988.17, Thaps23988.13, Thaps23988.15, Thaps23988.23, Thaps23988.7, Thaps23988.18, Thaps23988.16

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0469

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0095	0.37	17 410000

Most Highly Correlated Transcripts

23933 hypothetical protein 0.8471	21438 hypothetical protein 0.8428	23700 lysozyme_like superfamily 0.8355	269264 hypothetical protein 0.8269	23881 hypothetical protein 0.8244	6273 LRR_RI superfamily 0.822
20644 hypothetical protein 0.812	23894 hypothetical protein 0.7976	40445 Dynein_heavy superfamily 0.7735	22002 hypothetical protein 0.7735

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF1800 superfamily		Protein of unknown function (DUF1800); This is a family of large bacterial proteins of unknown...	-	106.19	1.05E-23	977 - 1123	superfamily	268242
DUF1800 superfamily		Protein of unknown function (DUF1800); This is a family of large bacterial proteins of unknown...	-	106.19	1.05E-23	977 - 1123	superfamily	268242
DUF1501 superfamily		Protein of unknown function (DUF1501); This family contains a number of hypothetical bacterial...	-	96.2292	8.81E-21	1877 - 2230	superfamily	268208

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
33663		Not available	227998	242616	Not available	Cre03.g175400.t1.2	AT5G42740.1	285564

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003899 GO:0003900 GO:0003901 GO:0003902 -

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