24318 (PSB_3) proteasome_beta_type_4
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24318 chr_11a (PSB_3) proteasome_beta_type_4 290644 291445 - proteasome_beta_type_4

Synonyms

NCBI ID Ensembl Genomes exon ID
7443285 Thaps24318.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0199

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0098
 0.36

Most Highly Correlated Transcripts

264377

(PSB7) proteasome_beta_type_7
0.9084

39157

(RPT2) PTZ00361
0.9067

2409

MPN_NPL4
0.9023

26868

(PSA3) proteasome_alpha_type_3
0.8969

262525

(PSB5) proteasome_beta_type_5
0.8949

10810

HP superfamily
0.8941

516

(RPT5) RPT1
0.8925

37585

MECDP_synthase
0.8914

261400

NA
0.8881

24560

PDI_a_family
0.8853

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the... cl00467 262.506 5.91E-88 37 - 241 specific 239729
Ntn_hydrolase superfamily The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are... - 262.506 5.91E-88 37 - 241 superfamily 260443
PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover,... - 120.095 1.95E-32 37 - 249 multi-dom 223711

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd866 PHATRDRAFT_bd866 269210 299843 218298 Cre06.g280850.t1.1 AT1G56450.1 294642

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0004175 GO:0005839 GO:0006511 GO:0004298 GO:0004299 -

GO:0004175

endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
GO Category: 
MF

GO:0005839

proteasome core complex

Details: 
A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
GO Category: 
CC

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004299

NA

Details: 
NA
GO Category: 
NA

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