24350 SunThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
24350	chr_11a	Sun	523598	527197	-	Sun

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448338	Thaps24350.1, Thaps24350.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0043

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0034	0.54

Most Highly Correlated Transcripts

bd1945 (bd1945) NA 0.896	34735 DRE_TIM_metallolyase superfamily 0.8801	36321 hypothetical protein 0.8774	23210 hypothetical protein 0.8733	267979 HCO3_cotransp superfamily 0.8727	269030 UTP15_C 0.8687
23242 PRK00142 0.8664	40200 TRX_reduct 0.8655	268136 COG1054 0.865	35164 acolac_lg 0.8649

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Sun		tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]	-	195.686	5.27E-57	79 - 439	multi-dom	223222

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments