24585 Syntaxin-6_N superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
24585	chr_13	Syntaxin-6_N superfamily	98414	99910	-	Syntaxin-6_N superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450554	Thaps24585.1, Thaps24585.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0326

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0211	0.43	0.64 2

Most Highly Correlated Transcripts

bd1877 (bd1877) NA 0.9392	263046 HA 0.8796	19158 GRX_PICOT_like 0.872	21910 hypothetical protein 0.8698	261566 Bud13 0.8682	23300 hypothetical protein 0.8677
21090 hypothetical protein 0.8675	267979 HCO3_cotransp superfamily 0.8637	20659 hypothetical protein 0.8619	23449 hypothetical protein 0.8614

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Syntaxin-6_N superfamily		Syntaxin 6, N-terminal; Members of this family, which are found in the amino terminus of various...	-	63.4293	1.44E-12	156 - 252	superfamily	255217

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_31559	PHATRDRAFT_31559	189739	310366	Not available	Not available	Not available	554576

KEGG

KEGG description	KEGG Pathway
SNARE interactions in vesicular transport	map04130

GO Terms

Not available -

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