24614 G-patch_2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24614 chr_13 G-patch_2 237529 239685 + G-patch_2

Synonyms

NCBI ID Ensembl Genomes exon ID
7445716 Thaps24614.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0392

Most Highly Correlated Transcripts

270222

0.9491

11664

DUF3510
0.8674

24580

hypothetical protein
0.8591

23630

UEV superfamily
0.8582

9364

hypothetical protein
0.8478

24583

Nitro_FMN_reductase superfamily
0.845

21751

DUF1336 superfamily
0.8438

10523

hypothetical protein
0.8418

23370

PKc_like superfamily
0.8408

21784

hypothetical protein
0.8404

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
G-patch_2 DExH-box splicing factor binding site; Yeast Spp2, a G-patch protein and spliceosome component,... cl02611 70.4586 1.22E-14 244 - 339 specific 257197
G-patch superfamily G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in... - 70.4586 1.22E-14 244 - 339 superfamily 261371

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45196 PHATRDRAFT_45196 178544 112176 212511 Cre06.g303500.t1.2 AT4G25020.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003755 GO:0004600 GO:0030051 GO:0042027 -

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

Details: 
Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
GO Category: 
MF

GO:0004600

NA

Details: 
NA
GO Category: 
NA

GO:0030051

NA

Details: 
NA
GO Category: 
NA

GO:0042027

NA

Details: 
NA
GO Category: 
NA

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