24829 UboxThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
24829	chr_14	Ubox	419580	422893	-	Ubox

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451225	Thaps24829.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0130

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0264	0.37	110 5800

Most Highly Correlated Transcripts

262719 CHD 0.9284	25087 hypothetical protein 0.9233	21893 CysPc 0.9171	2086 zf-UBP 0.9125	3842 hypothetical protein 0.9046	1762 PRA1 superfamily 0.9039
5659 hypothetical protein 0.8973	11294 XendoU 0.8951	264628 UxaC 0.8939	20664 hypothetical protein 0.8934

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Ubox		Modified RING finger domain; Modified RING finger domain, without the full complement of Zn2+-...	cl17544	79.5865	1.03E-17	213 - 275	specific	128780
U-box superfamily		U-box domain; This domain is related to the Ring finger pfam00097 but lacks the zinc binding...	-	79.5865	1.03E-17	213 - 275	superfamily	266741

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0000151 GO:0004842 GO:0016567 -

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