25122 RING
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25122 chr_16a RING 175263 177088 - RING

Synonyms

NCBI ID Ensembl Genomes exon ID
7442502 Thaps25122.2, Thaps25122.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0417

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0228
 0.34

Most Highly Correlated Transcripts

bd1806

(bd1806) AAT_I superfamily
0.9252

bd690

(bd690) NA
0.8873

bd738

(bd738) NA
0.8846

bd1801

(bd1801) NA
0.8841

bd1934

(bd1934) NA
0.8796

bd1946

(bd1946) NA
0.8645

bd643

(bd643) NA
0.8401

bd1790

(bd1790) NA
0.8264

bd737

(bd737) NA
0.8205

bd930

(bd930) HA
0.8174

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60... cl17238 58.6112 2.25E-11 255 - 302 specific 238093
RING superfamily RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60... - 58.6112 2.25E-11 255 - 302 superfamily 266579

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 140791 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000151 GO:0004842 GO:0008270 GO:0016567 GO:0003887 GO:0003889 GO:0003890 GO:0003891 GO:0003893 GO:0003894 GO:0003895 GO:0015999 GO:0016000 GO:0016448 GO:0016449 GO:0016450 GO:0016451 GO:0016452 GO:0019984 -

GO:0000151

ubiquitin ligase complex

Details: 
A protein complex that includes a ubiquitin-protein ligase and other proteins that may confer substrate specificity on the complex.
GO Category: 
CC

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0016567

protein ubiquitination

Details: 
The process in which one or more ubiquitin groups are added to a protein.
GO Category: 
BP

GO:0003887

DNA-directed DNA polymerase activity

Details: 
Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer.
GO Category: 
MF

GO:0003889

NA

Details: 
NA
GO Category: 
NA

GO:0003890

NA

Details: 
NA
GO Category: 
NA

GO:0003891

NA

Details: 
NA
GO Category: 
NA

GO:0003893

NA

Details: 
NA
GO Category: 
NA

GO:0003894

NA

Details: 
NA
GO Category: 
NA

GO:0003895

NA

Details: 
NA
GO Category: 
NA

GO:0015999

NA

Details: 
NA
GO Category: 
NA

GO:0016000

NA

Details: 
NA
GO Category: 
NA

GO:0016448

NA

Details: 
NA
GO Category: 
NA

GO:0016449

NA

Details: 
NA
GO Category: 
NA

GO:0016450

NA

Details: 
NA
GO Category: 
NA

GO:0016451

NA

Details: 
NA
GO Category: 
NA

GO:0016452

NA

Details: 
NA
GO Category: 
NA

GO:0019984

NA

Details: 
NA
GO Category: 
NA

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