25560 PseudoU_synth_RluCD_like
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
25560 chr_19c_29 PseudoU_synth_RluCD_like 242120 244035 + PseudoU_synth_RluCD_like
NCBI ID Ensembl Genomes exon ID
7444413 Thaps25560.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0001
Normalized Mean Residue
Thaps_bicluster_0063
0.47
hypothetical protein
0.9823
(bd74) T6A_YgjD
0.9152
(bd1807) RRS1 superfamily
0.8673
(bd1945) NA
0.8586
(bd621) NA
0.8506
NAD_binding_8 superfamily
0.8468
UPF0051
0.8393
hypothetical protein
0.8064
mTERF superfamily
0.8005
(bd190) SrmB
0.8
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_RluCD_like Pseudouridine synthase, RsuA/RluD family; This group is comprised of eukaryotic, bacterial and... cl00130 115.512 1.62E-29 329 - 539 specific 211346
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 115.512 1.62E-29 329 - 539 superfamily 260207
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 321555 Not available Not available Not available Not available
KEGG description KEGG Pathway
Not available Not available
GO:0003723 GO:0006396 GO:0009982 GO:0004730 -

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF
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