25560 PseudoU_synth_RluCD_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25560 chr_19c_29 PseudoU_synth_RluCD_like 242120 244035 + PseudoU_synth_RluCD_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7444413 Thaps25560.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0001

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0063
 0.47

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9823

bd74

(bd74) T6A_YgjD
0.9152

bd1807

(bd1807) RRS1 superfamily
0.8673

bd1945

(bd1945) NA
0.8586

bd621

(bd621) NA
0.8506

261407

NAD_binding_8 superfamily
0.8468

268364

UPF0051
0.8393

3186

hypothetical protein
0.8064

9485

mTERF superfamily
0.8005

bd190

(bd190) SrmB
0.8

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_RluCD_like Pseudouridine synthase, RsuA/RluD family; This group is comprised of eukaryotic, bacterial and... cl00130 115.512 1.62E-29 329 - 539 specific 211346
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 115.512 1.62E-29 329 - 539 superfamily 260207

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 321555 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0009982 GO:0004730 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

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