25634 PseudoU_synth superfamily
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
25634 chr_20 PseudoU_synth superfamily 400528 402917 + PseudoU_synth superfamily
NCBI ID Ensembl Genomes exon ID
7443368 Thaps25634.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0500
Normalized Mean Residue
Thaps_bicluster_0010
0.38
(bd1946) NA
0.9125
hypothetical protein
0.9011
(bd788) NA
0.899
(bd1801) NA
0.8775
(bd738) NA
0.8735
(bd692) NA
0.8686
(bd930) HA
0.8681
(bd1877) NA
0.864
hypothetical protein
0.8603
(bd1934) NA
0.8602
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 161.102 4.06E-46 101 - 449 superfamily 260207
truA tRNA pseudouridine synthase A; Validated - 159.922 1.14E-45 98 - 449 multi-dom 234577
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available
KEGG description KEGG Pathway
Not available Not available
GO:0004730 GO:0008033 GO:0009982 GO:0016439 -

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

tRNA processing

Details: 
The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
GO Category: 
BP

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

NA

Details: 
NA
GO Category: 
NA
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