25840 CdCA1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25840	chr_23	CdCA1	208422	209354	-	CdCA1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448875	Thaps25840.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0001

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0149	0.40	0.00066 1.8

Most Highly Correlated Transcripts

22208 COG0075 0.8238	14147 PRK08198 0.8181	261608 PLN02585 0.8011	31169 PRX_BCP 0.7929	26991 GRX_GRXh_1_2_like 0.7915	261641 NOX_Duox_like_FAD_NADP 0.7896
9903 (Tp_bZIP24b) regulator [Rayko] 0.7888	28125 PLN00203 0.782	25478 hypothetical protein 0.7772	269147 NAD_binding_8 superfamily 0.7715

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CdCA1 superfamily		Cadmium carbonic anhydrase repeat; This domain is the cadmium carbonic anhydrase repeat unit of the...	-	287.391	2.36E-98	42 - 221	superfamily	256061
CdCA1 superfamily		Cadmium carbonic anhydrase repeat; This domain is the cadmium carbonic anhydrase repeat unit of the...	-	287.391	2.36E-98	42 - 221	superfamily	256061

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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