25933 tptThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25933	chr_2	tpt	1273974	1275509	+	tpt

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450403	Thaps25933.3, Thaps25933.2, Thaps25933.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0210

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0160	0.28	0.29 0.56

Most Highly Correlated Transcripts

bd1645 (bd1645) tpt 0.9451	bd1306 (bd1306) NA 0.9392	bd211 (bd211) Maf_Ham1 superfamily 0.9306	bd1893 (bd1893) NA 0.9279	36235 p450 superfamily 0.9206	260789 MMT1 0.9166
40193 NA 0.9158	8701 hypothetical protein 0.9158	bd1380 (bd1380) ycf39 0.9129	bd718 (bd718) PRK10387 0.9099

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TPT superfamily		Triose-phosphate Transporter family; This family includes transporters with a specificity for...	-	65.6544	2.23E-13	162 - 312	superfamily	251760
tpt		Tpt phosphate/phosphoenolpyruvate translocator; The 6-8 TMS Triose-phosphate Transporter (TPT)...	-	126.764	6.92E-34	12 - 311	multi-dom	129898

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_50742	PHATRDRAFT_50742	209949	318604	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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