26109 (PRS1) PLN02369
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26109 chr_2 (PRS1) PLN02369 535005 536760 - PLN02369

Synonyms

NCBI ID Ensembl Genomes exon ID
7448675 Thaps26109.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0066

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0132
 0.41

Most Highly Correlated Transcripts

20570

HABP4_PAI-RBP1
0.8672

30478

(hisH) PLN02617
0.8567

39740

eIF-5_eIF-2B superfamily
0.855

bd1652

(bd1652) ABC_ATPase superfamily
0.8486

bd687

(bd687) NA
0.8387

31394

COG0436
0.8363

ThpsCt031

(trnP(ugg)')
0.8343

20571

Membrane-FADS-like superfamily
0.8343

270139

Aa_trans superfamily
0.8333

22240

eRF1
0.8289

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PRTases_typeI Phosphoribosyl transferase (PRT)-type I domain; Phosphoribosyl transferase (PRT) domain. The type I... cl00309 83.214 5.64E-19 332 - 459 specific 206754
PRTases_typeI superfamily Phosphoribosyl transferase (PRT)-type I domain; Phosphoribosyl transferase (PRT) domain. The type I... - 83.214 5.64E-19 332 - 459 superfamily 260342
Pribosyltran_N superfamily N-terminal domain of ribose phosphate pyrophosphokinase; This family is frequently found N-terminal... - 212.274 1.21E-66 182 - 298 superfamily 258077
Pribosyltran_N superfamily N-terminal domain of ribose phosphate pyrophosphokinase; This family is frequently found N-terminal... - 212.274 1.21E-66 182 - 298 superfamily 258077
PLN02369 ribose-phosphate pyrophosphokinase - 476.494 7.76E-167 191 - 499 multi-dom 215209

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0009116 GO:0016740 GO:0004749 GO:0009165 -

GO:0009116

nucleoside metabolic process

Details: 
The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine).
GO Category: 
BP

GO:0016740

transferase activity

Details: 
Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
GO Category: 
MF

GO:0004749

ribose phosphate diphosphokinase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + ATP = 5-phospho-alpha-D-ribose 1-diphosphate + AMP + 2 H(+).
GO Category: 
MF

GO:0009165

nucleotide biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates).
GO Category: 
BP

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