261228 Robl_LC7
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261228 chr_2 Robl_LC7 335936 336417 - Robl_LC7

Synonyms

NCBI ID Ensembl Genomes exon ID
7442224 Thaps261228.3, Thaps261228.2, Thaps261228.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0218

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0280
 0.36

Most Highly Correlated Transcripts

33075

RimI
0.9202

6960

Methyltransf_31
0.9181

3119

hypothetical protein
0.9139

20014

TBCA
0.907

plastid_psb28

0.9059

1871

hypothetical protein
0.9026

7025

(Tp_Myb2R6) L-asparaginase_like superfamily
0.8994

3204

hypothetical protein
0.8989

4108

hypothetical protein
0.8985

5701

hypothetical protein
0.897

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Robl_LC7 Roadblock/LC7 domain; This family includes proteins that are about 100 amino acids long and have... cl00886 53.3498 8.75E-11 2 - 88 specific 214939
Robl_LC7 superfamily Roadblock/LC7 domain; This family includes proteins that are about 100 amino acids long and have... - 53.3498 8.75E-11 2 - 88 superfamily 260680

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46620 PHATRDRAFT_46620 Not available Not available 77265 Cre33.g759047.t1.1 Not available 561767

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments