261607 IF4E
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261607 chr_2 IF4E 2561625 2562816 + IF4E

Synonyms

NCBI ID Ensembl Genomes exon ID
7452949 Thaps261607.1, Thaps261607.2, Thaps261607.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0056

Most Highly Correlated Transcripts

36007

Aldolase_II superfamily
0.9202

35136

NA
0.9148

25918

Porin3 superfamily
0.9054

30701

PRK05279
0.9049

37497

cysE
0.9037

41655

Chloroa_b-bind
0.9

38270

hypothetical protein
0.8995

25279

TCP1_zeta
0.8989

22596

PLN02296
0.8983

10493

Ribosomal_L7_L12
0.898

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
IF4E Eukaryotic initiation factor 4E; Eukaryotic initiation factor 4E. cl02106 136.575 1.56E-40 12 - 185 specific 250771
IF4E superfamily Eukaryotic initiation factor 4E; Eukaryotic initiation factor 4E. - 136.575 1.56E-40 12 - 185 superfamily 261179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44459 PHATRDRAFT_44459 270328 242564 414699 Not available Not available 553636

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0003723 GO:0003743 GO:0005737 GO:0006413 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0003743

translation initiation factor activity

Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006413

translational initiation

Details: 
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
GO Category: 
BP

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