261716 GASThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
261716	chr_3	GAS	542787	544343	+	GAS

Synonyms

NCBI ID	Ensembl Genomes exon ID
7441790	Thaps261716.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0151

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0024	0.39

Most Highly Correlated Transcripts

29469 hypothetical protein 0.8761	31993 DUF3449 0.8579	4860 hypothetical protein 0.8573	261492 HAM1 0.8571	11848 hypothetical protein 0.855	261490 HemK 0.8538
269724 PP2Cc 0.8531	2434 Ion_trans 0.8524	37642 nascent-polypeptide-associated complex alpha polypeptide-like protein 0.8516	24783 hypothetical protein 0.8516

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
GAS		Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of...	-	96.1406	6.59E-23	269 - 469	multi-dom	258123

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	73993	Cre11.g476850.t1.2	Not available	534444

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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