26190 SHMT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26190 chr_4 SHMT 512999 518855 - SHMT

Synonyms

NCBI ID Ensembl Genomes exon ID
7452595 Thaps26190.1, Thaps26190.3, Thaps26190.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0039

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0127
 0.38

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9351

30701

PRK05279
0.9009

40034

thrS
0.8795

31451

rplO
0.8753

13393

PLN02321
0.8708

32053

PRK08661
0.8672

20843

hypothetical protein
0.8652

41655

Chloroa_b-bind
0.8642

37934

GRX_PICOT_like
0.8639

10081

MPP_PPP_family
0.8635

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-... cl18945 602.654 0 26 - 426 specific 99733
AAT_I superfamily Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent... - 602.654 0 26 - 426 superfamily 267298

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_8717 PHATRDRAFT_8717 274846 314041 422976 Cre09.g411900.t1.1 AT4G32520.2 545931

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004372 GO:0006544 GO:0006563 -

GO:0004372

glycine hydroxymethyltransferase activity

Details: 
Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine.
GO Category: 
MF

GO:0006544

glycine metabolic process

Details: 
The chemical reactions and pathways involving glycine, aminoethanoic acid.
GO Category: 
BP

GO:0006563

L-serine metabolic process

Details: 
The chemical reactions and pathways involving L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.
GO Category: 
BP

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