262070 WD40
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262070 chr_4 WD40 437640 439495 + WD40

Synonyms

NCBI ID Ensembl Genomes exon ID
7447445 Thaps262070.3, Thaps262070.2, Thaps262070.4, Thaps262070.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0407

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0035
 0.44

Most Highly Correlated Transcripts

4565

hypothetical protein
0.9243

10479

hypothetical protein
0.8955

5921

hypothetical protein
0.8947

23517

PRK13759
0.8926

32139

hypothetical protein
0.891

9174

DUF563
0.8895

1275

hypothetical protein
0.8892

9861

DUF563
0.8891

9364

hypothetical protein
0.8844

3310

hypothetical protein
0.8807

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 167.512 2.87E-47 275 - 541 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 167.512 2.87E-47 275 - 541 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 114.801 1.01E-27 274 - 540 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43401 PHATRDRAFT_43401 180766 294039 Not available Not available AT5G50230.1 317644

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000250 -

GO:0000250

lanosterol synthase activity

Details: 
Catalysis of the reaction: (S)-2,3-epoxysqualene = lanosterol. This is a cyclization reaction that forms the sterol nucleus.
GO Category: 
MF

Add comment

Log in to post comments