263074 Synaptobrevin superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263074 chr_7 Synaptobrevin superfamily 285779 286624 + Synaptobrevin superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7446624 Thaps263074.1, Thaps263074.3, Thaps263074.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0144

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0046
 0.42

Most Highly Correlated Transcripts

bd410

(bd410) HNHc
0.8992

bd415

(bd415) arom_aa_hydroxylase superfamily
0.8869

39241

Ras_like_GTPase superfamily
0.8832

41425

MDH_cytoplasmic_cytosolic
0.8738

21239

Cyt_b561_FRRS1_like
0.8687

bd643

(bd643) NA
0.8673

bd1808

(bd1808) NA
0.8652

12021

hypothetical protein
0.8628

bd1841

(bd1841) CAP10 superfamily
0.8596

bd690

(bd690) NA
0.8554

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Synaptobrevin superfamily Synaptobrevin; Synaptobrevin. - 56.0084 6.52E-11 133 - 201 superfamily 250253

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45601 PHATRDRAFT_45601 224045 225484 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016021 GO:0016192 -

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0016192

vesicle-mediated transport

Details: 
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO Category: 
BP

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