263129 COG3899Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263129	chr_7	COG3899	672245	676046	+	COG3899

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449192	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0361

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0084	0.43	0.00000000066 0.00000023

Most Highly Correlated Transcripts

bd1806 (bd1806) AAT_I superfamily 0.9111	bd524 (bd524) NA 0.8129	36835 S_TKc 0.7915	bd1935 (bd1935) NA 0.7883	22706 hypothetical protein 0.7826	bd643 (bd643) NA 0.7716
bd1946 (bd1946) NA 0.7675	4067 hypothetical protein 0.7651	bd1439 (bd1439) ycf35 0.7641	bd923 (bd923) NA 0.7572

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_16		AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	cl18944	81.3549	1.98E-17	60 - 255	specific	257559
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	81.3549	1.98E-17	60 - 255	superfamily	267297
COG3899		Predicted ATPase [General function prediction only]	-	259.638	4.04E-73	60 - 847	multi-dom	226415

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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