263191 PLN03076Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263191	chr_7	PLN03076	1017518	1022159	+	PLN03076

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444135	Thaps263191.8, Thaps263191.5, Thaps263191.1, Thaps263191.3, Thaps263191.9, Thaps263191.2, Thaps263191.4, Thaps263191.7, Thaps263191.6

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0263

Most Highly Correlated Transcripts

12500 SNF2_N 0.956	596 Adaptin_N 0.9547	33984 PKc_like superfamily 0.9494	2065 hypothetical protein 0.9493	33225 MYSc 0.9486	262104 PI-PLCc_GDPD_SF superfamily 0.9468
262826 DUF3608 superfamily 0.9451	263859 GH18_chitinase-like superfamily 0.9445	262607 WD40 superfamily 0.9441	264679 Syja_N 0.9438

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Sec7		Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central...	cl00136	232.498	1.39E-69	740 - 928	specific	238100
Sec7 superfamily		Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central...	-	232.498	1.39E-69	740 - 928	superfamily	260210
Sec7_N superfamily		Guanine nucleotide exchange factor in Golgi transport N-terminal; The full-length Sec7 functions...	-	207.451	4.55E-61	497 - 660	superfamily	257293
Sec7_N superfamily		Guanine nucleotide exchange factor in Golgi transport N-terminal; The full-length Sec7 functions...	-	207.451	4.55E-61	497 - 660	superfamily	257293
DUF1981 superfamily		Domain of unknown function (DUF1981); Members of this family of functionally uncharacterized...	-	95.3493	8.34E-23	1237 - 1301	superfamily	204198
DUF1981 superfamily		Domain of unknown function (DUF1981); Members of this family of functionally uncharacterized...	-	95.3493	8.34E-23	1237 - 1301	superfamily	204198
PLN03076		ARF guanine nucleotide exchange factor (ARF-GEF); Provisional	-	651.888	0	251 - 1300	multi-dom	215560

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_54591	PHATRDRAFT_54591	197921	240607	464442	Not available	AT1G01960.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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