2635 RCC1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
2635	chr_2	RCC1	1465294	1468945	-	RCC1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446656	Thaps2635.8, Thaps2635.5, Thaps2635.11, Thaps2635.12, Thaps2635.2, Thaps2635.7, Thaps2635.10, Thaps2635.1, Thaps2635.3, Thaps2635.6, Thaps2635.9, Thaps2635.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0384

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0253	0.34	0.00027 190000

Most Highly Correlated Transcripts

24894 hypothetical protein 0.9372	264656 Tryp_SPc 0.9343	bd463 (bd463) Aa_trans superfamily 0.9332	5357 hypothetical protein 0.9301	262378 (FRU1) hypothetical protein 0.9294	8219 hypothetical protein 0.9166
24561 hypothetical protein 0.9114	bd1893 (bd1893) NA 0.8982	10109 hypothetical protein 0.8932	bd856 (bd856) NA 0.8904

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RCC1 superfamily		Regulator of chromosome condensation (RCC1) repeat; Regulator of chromosome condensation (RCC1)...	-	60.2331	2.49E-11	691 - 738	superfamily	249843
RCC1 superfamily		Regulator of chromosome condensation (RCC1) repeat; Regulator of chromosome condensation (RCC1)...	-	60.2331	2.49E-11	691 - 738	superfamily	249843

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003899 GO:0003900 GO:0003901 GO:0003902 -

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