263627 FG-GAP_2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263627 chr_10 FG-GAP_2 219495 220701 - FG-GAP_2

Synonyms

NCBI ID Ensembl Genomes exon ID
7451049 Thaps263627.1, Thaps263627.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0353

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0074
 0.37

Most Highly Correlated Transcripts

4108

hypothetical protein
0.8124

262676

0.754

3981

hypothetical protein
0.7384

bd811

(bd811) NA
0.7256

264557

FG-GAP_2
0.7151

bd650

(bd650) NA
0.7128

264954

FG-GAP_2
0.6983

264659

0.6826

261038

0.6576

bd1069

(bd1069) NA
0.6539

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 59.4145 8.87E-12 161 - 206 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 59.4145 8.87E-12 161 - 206 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 59.4145 8.87E-12 161 - 206 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 59.4145 8.87E-12 161 - 206 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 59.4145 8.87E-12 161 - 206 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 59.4145 8.87E-12 161 - 206 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 59.4145 8.87E-12 161 - 206 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 59.4145 8.87E-12 161 - 206 superfamily 258488

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0007155 GO:0007160 GO:0008305 -

GO:0007155

cell adhesion

Details: 
The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
GO Category: 
BP

GO:0007160

cell-matrix adhesion

Details: 
The binding of a cell to the extracellular matrix via adhesion molecules.
GO Category: 
BP

GO:0008305

integrin complex

Details: 
A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands.
GO Category: 
CC

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