263801 RluA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263801 chr_11a RluA 527540 529464 + RluA

Synonyms

NCBI ID Ensembl Genomes exon ID
7448339 Thaps263801.2, Thaps263801.3, Thaps263801.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0222

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0101
 0.32

Most Highly Correlated Transcripts

bd1877

(bd1877) NA
0.9467

4372

hypothetical protein
0.8968

23737

tRNA_m1G_MT superfamily
0.864

1692

hypothetical protein
0.859

22965

SrmB
0.8574

25183

hypothetical protein
0.8572

25639

APH_ChoK_like superfamily
0.841

261893

Ofd1_CTDD
0.8406

7742

KTI12
0.84

13308

PLN02948
0.8356

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_RluCD_like Pseudouridine synthase, RsuA/RluD family; This group is comprised of eukaryotic, bacterial and... cl00130 149.41 6.23E-42 326 - 508 specific 211346
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 149.41 6.23E-42 326 - 508 superfamily 260207
RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis] - 171.725 1.25E-48 247 - 512 multi-dom 223638

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44844 PHATRDRAFT_44844 228883 255525 57488 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0009982 GO:0004730 GO:0016439 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

GO:0016439

NA

Details: 
NA
GO Category: 
NA

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