264063 RsuA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264063 chr_13 RsuA 863171 864272 + RsuA

Synonyms

NCBI ID Ensembl Genomes exon ID
7447877 Thaps264063.3, Thaps264063.1, Thaps264063.2, Thaps264063.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0451

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0055
 0.46

Most Highly Correlated Transcripts

22592

CBS_pair_10
0.8696

18662

ADK
0.866

19158

GRX_PICOT_like
0.8515

16743

Peptidase_M48 superfamily
0.8369

20837

hypothetical protein
0.8341

bd415

(bd415) arom_aa_hydroxylase superfamily
0.8322

16114

PLN02350
0.8274

bd1058

(bd1058) NA
0.8225

260925

nucleoside_deaminase
0.8221

267979

HCO3_cotransp superfamily
0.8173

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 169.412 2.58E-52 66 - 241 superfamily 260207
RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation,... - 187.45 2.92E-58 12 - 244 multi-dom 224108

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_13855 PHATRDRAFT_13855 203827 170317 56325 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004730 GO:0003723 GO:0006396 GO:0009982 -

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

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