264081 YSH1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264081 chr_13 YSH1 977360 978870 - YSH1

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0050

Most Highly Correlated Transcripts

bd731

(bd731) NA
0.883

36407

PRK09427
0.8596

bd1465

(bd1465) PKc_like superfamily
0.8577

25263

Patatin_and_cPLA2 superfamily
0.8561

bd1464

(bd1464) CAP_ED
0.8525

23130

NT_PAP_TUTase
0.852

1255

Nic96 superfamily
0.8491

268458

ATPase-IIA1_Ca
0.8483

5788

TFIIS_M
0.8445

7996

hypothetical protein
0.839

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Beta-Casp Beta-Casp domain; The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA... cl12567 86.0544 1.37E-20 261 - 377 specific 214983
Beta-Casp superfamily Beta-Casp domain; The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA... - 86.0544 1.37E-20 261 - 377 superfamily 264703
YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal... - 142.177 3.54E-38 33 - 377 multi-dom 224157

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_52285 PHATRDRAFT_52285 174306 193992 Not available Cre12.g487600.t1.1 AT5G23880.1 473604

KEGG

KEGG description KEGG Pathway
mRNA surveillance pathway map03015

GO Terms

Not available -

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