264222 POLBc superfamilyThalassiosira pseudonana

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
264222	chr_14	POLBc superfamily	800835	807809	+	POLBc superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7441818	Thaps264222.4, Thaps264222.13, Thaps264222.1, Thaps264222.11, Thaps264222.10, Thaps264222.7, Thaps264222.9, Thaps264222.8, Thaps264222.3, Thaps264222.6, Thaps264222.5, Thaps264222.2, Thaps264222.12

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0269

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0095	0.37	17 410000

Most Highly Correlated Transcripts

31145 COG4581 0.8586	37609 PKc_like superfamily 0.8543	39062 SpoU 0.8511	20771 hypothetical protein 0.8497	2443 hypothetical protein 0.8476	22690 RRM_Nop6 0.8405
42133 CHD 0.834	261601 PA14 0.8312	35963 CE4_SF superfamily 0.8259	4517 hypothetical protein 0.8185

Conserved Domains

Name	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
POLBc superfamily	DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding...	-	506.368	6.78E-162	1452 - 1903	superfamily	245235
DnaQ_like_exo superfamily	DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; The DnaQ-like...	-	133.129	4.73E-34	1153 - 1413	superfamily	263941
DNA_pol_B	DNA polymerase family B; This region of DNA polymerase B appears to consist of more than one...	-	246.066	2.70E-70	1452 - 1904	multi-dom	249619

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_50124	PHATRDRAFT_50124	205435	255250	227431	Cre09.g387400.t1.1	AT1G67500.1	Not available

KEGG

KEGG description	KEGG Pathway
Metabolic pathways	map01100

GO Terms

GO:0000166 GO:0003677 GO:0003887 GO:0006260 GO:0008408 GO:0003889 GO:0003890 GO:0003891 GO:0003893 GO:0003894 GO:0003895 GO:0015999 GO:0016000 GO:0016448 GO:0016449 GO:0016450 GO:0016451 GO:0016452 GO:0019984 -

Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

GO Category:

GO:0003677

DNA binding

Details:

Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

GO Category:

GO:0003887

DNA-directed DNA polymerase activity

Details:

Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer.

GO Category:

GO:0006260

DNA replication

Details:

The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.

GO Category:

GO:0008408

3'-5' exonuclease activity

Details:

Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.

GO Category:

264222 POLBc superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Synonyms

Hierarchical Clustering

Motif-Guided Biclusters

Most Highly Correlated Transcripts

Conserved Domains

Homologs in Other Species

KEGG

GO Terms

GO:0000166

GO:0003677

GO:0003887

GO:0006260

GO:0008408

GO:0003889

GO:0003890

GO:0003891

GO:0003893

GO:0003894

GO:0003895

GO:0015999

GO:0016000

GO:0016448

GO:0016449

GO:0016450

GO:0016451

GO:0016452

GO:0019984

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