264722 Rab
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264722 chr_20 Rab 564644 566474 + Rab

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0156

Most Highly Correlated Transcripts

bd1870

(bd1870) NA
0.8371

4108

hypothetical protein
0.8359

10894

hypothetical protein
0.8252

21220

KU superfamily
0.8145

268619

Ras_like_GTPase superfamily
0.8132

21259

UAA
0.8108

11589

SpoVK
0.8106

23217

hypothetical protein
0.8061

25377

Ion_trans
0.8052

2097

hypothetical protein
0.8049

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Rab Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases); Rab GTPases form... cl17170 142.21 8.27E-42 68 - 240 specific 206640
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 142.21 8.27E-42 68 - 240 superfamily 266525
COG1100 GTPase SAR1 and related small G proteins [General function prediction only] - 88.4791 2.97E-21 67 - 258 multi-dom 224025

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Phagosome map04145

GO Terms

GO:0005525 GO:0007264 GO:0015031 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0015031

protein transport

Details: 
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

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