264761 (LigaseIV) DNA_ligase_A_NThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
264761	chr_22	(LigaseIV) DNA_ligase_A_N	59509	60937	+	DNA_ligase_A_N

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443664	Thaps264761.2, Thaps264761.3, Thaps264761.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0178

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0021	0.47	0.21 12000

Most Highly Correlated Transcripts

bd1816 (bd1816) NA 0.9274	4842 Cas1_AcylT superfamily 0.8714	5833 hypothetical protein 0.8681	7601 hypothetical protein 0.8623	263989 (HSF13) hypothetical protein 0.8596	11869 hypothetical protein 0.8537
262607 WD40 superfamily 0.8483	262751 ERO1 0.8458	2031 hypothetical protein 0.8454	2587 O-FucT_like 0.8423

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DNA_ligase_A_N superfamily		DNA ligase N terminus; This region is found in many but not all ATP-dependent DNA ligase enzymes (...	-	68.0237	1.14E-13	168 - 366	superfamily	252736
DNA_ligase_A_N superfamily		DNA ligase N terminus; This region is found in many but not all ATP-dependent DNA ligase enzymes (...	-	68.0237	1.14E-13	168 - 366	superfamily	252736

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_50218	PHATRDRAFT_50218	Not available	322119	Not available	Not available	Not available	284249

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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