26686 WD40
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26686 chr_1 WD40 1470147 1471558 + WD40

Synonyms

NCBI ID Ensembl Genomes exon ID
7451479 Thaps26686.2, Thaps26686.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0229

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0101
 0.32

Most Highly Correlated Transcripts

bd1876

(bd1876) NatB_MDM20 superfamily
0.9356

bd96

(bd96) eIF-3_zeta
0.8856

3314

hypothetical protein
0.8771

bd1515

(bd1515) Adenylsuccinate_lyase_2
0.8751

40044

(MAP1) PLN03158
0.869

32920

UPF0066
0.8516

bd1709

(bd1709) NA
0.8403

22854

PTS_2-RNA
0.8396

3416

TPR
0.8278

41122

MPN_eIF3h
0.8259

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 154.415 9.18E-44 6 - 319 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 154.415 9.18E-44 6 - 319 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 97.4667 1.21E-22 6 - 319 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_39526 PHATRDRAFT_39526 246754 70669 438175 Cre03.g194400.t1.2 AT2G46290.1 551045

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0003847 -

GO:0003847

1-alkyl-2-acetylglycerophosphocholine esterase activity

Details: 
Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate.
GO Category: 
MF

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