268839 RRM1_TatSF1_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268839 chr_5 RRM1_TatSF1_like 388000 388989 + RRM1_TatSF1_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7451743 Thaps268839.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0245

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0018
 0.42

Most Highly Correlated Transcripts

10487

hypothetical protein
0.8931

2855

hypothetical protein
0.8918

8376

hypothetical protein
0.8829

30701

PRK05279
0.8827

4510

hypothetical protein
0.8825

2154

hypothetical protein
0.8824

2540

hypothetical protein
0.882

35713

hypothetical protein
0.8813

1676

hypothetical protein
0.8792

6997

hypothetical protein
0.8781

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM1_TatSF1_like RNA recognition motif 1 in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins; This subfamily... cl17169 128.035 5.97E-37 3 - 98 specific 240727
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 101.852 3.83E-27 147 - 234 superfamily 266524
RRM3_RBM39_like RNA recognition motif 3 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins; This... cl17169 101.852 3.83E-27 147 - 234 specific 240731
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 101.852 3.83E-27 147 - 234 superfamily 266524

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43359 PHATRDRAFT_43359 194212 101088 Not available Cre17.g707050.t1.2 AT5G16260.1 311360

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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