268963 Pumilio
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268963 chr_5 Pumilio 2058103 2065166 - Pumilio

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0365

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0109
 0.50

Most Highly Correlated Transcripts

bd1806

(bd1806) AAT_I superfamily
0.9468

bd1934

(bd1934) NA
0.8738

bd643

(bd643) NA
0.8638

5080

hypothetical protein
0.8623

bd690

(bd690) NA
0.8473

32176

GABARAP
0.8386

20619

hypothetical protein
0.8331

264364

PLN02929
0.833

22795

hypothetical protein
0.8317

264420

PseudoU_synth_EcTruA
0.8208

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Pumilio superfamily Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain)... - 296.04 4.63E-96 14 - 317 superfamily 153420
Pumilio superfamily Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain)... - 296.04 4.63E-96 14 - 317 superfamily 153420

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0016071 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0016071

mRNA metabolic process

Details: 
The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.
GO Category: 
BP

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