269076 Peptidase_C19 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269076 chr_6 Peptidase_C19 superfamily 870350 873114 + Peptidase_C19 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443623 Thaps269076.3, Thaps269076.1, Thaps269076.2, Thaps269076.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0257

Most Highly Correlated Transcripts

12899

AAA
0.9143

22031

Sin_N superfamily
0.8571

3563

(Tp_CCCH2) WD40 superfamily
0.8512

12836

EEP superfamily
0.8478

38475

HA2
0.8408

22688

hypothetical protein
0.8406

23795

SGT1 superfamily
0.8405

13448

Sec1
0.8366

10339

hypothetical protein
0.8357

1132

hypothetical protein
0.8345

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_C19 superfamily Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove... - 230.287 1.20E-68 252 - 761 superfamily 261337

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_18008 PHATRDRAFT_18008 211853 31088 426257 Cre02.g080350.t1.1 AT3G20630.1 349574

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004197 GO:0004221 GO:0006511 -

GO:0004197

cysteine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004221

ubiquitin thiolesterase activity

Details: 
Catalysis of the reaction: ubiquitin C-terminal thioester + H2O = ubiquitin + a thiol.
GO Category: 
MF

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

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