269080 PLN02327
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269080 chr_6 PLN02327 908375 911197 + PLN02327

Synonyms

NCBI ID Ensembl Genomes exon ID
7445938 Thaps269080.4, Thaps269080.2, Thaps269080.1, Thaps269080.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0179
 0.28

Most Highly Correlated Transcripts

bd190

(bd190) SrmB
0.9581

24429

PRMT5 superfamily
0.9233

bd1945

(bd1945) NA
0.9173

21245

MPP_superfamily superfamily
0.9131

25434

PRK00142
0.9083

25120

U3_assoc_6 superfamily
0.9012

268130

hypothetical protein
0.8978

23061

hypothetical protein
0.897

22482

hypothetical protein
0.8932

5666

Las1 superfamily
0.8926

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase; Type... cl00020 369.19 7.21E-124 376 - 625 specific 153217
GAT_1 superfamily Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase (GATase1... - 369.19 7.21E-124 376 - 625 superfamily 260141
CTP_synth_N CTP synthase N-terminus; This family consists of the N-terminal region of the CTP synthase protein... cl17203 483.516 7.04E-168 86 - 362 specific 253716
Fer4_NifH superfamily The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain.... - 483.516 7.04E-168 86 - 362 superfamily 266552
PLN02327 CTP synthase - 982.593 0 85 - 637 multi-dom 215186

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50034 PHATRDRAFT_50034 226043 209401 Not available Cre09.g406050.t1.2 AT4G20320.2 344165

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0003824 GO:0003883 GO:0006221 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0003883

CTP synthase activity

Details: 
Catalysis of the reaction: ATP + UTP + NH3 = ADP + phosphate + CTP.
GO Category: 
MF

GO:0006221

pyrimidine nucleotide biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
GO Category: 
BP

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