269765 RluA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269765 chr_14 RluA 470430 471835 - RluA

Synonyms

NCBI ID Ensembl Genomes exon ID
7452675 Thaps269765.1, Thaps269765.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0039

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0235
 0.25

Most Highly Correlated Transcripts

6610

hypothetical protein
0.9368

21235

RpsA
0.9091

24832

hypothetical protein
0.9087

ThpsCp134

(rpl34) ribosomal protein L34
0.9067

27618

Ribosomal_L10
0.8975

bd997

(bd997) rpoC1
0.8923

23462

hypothetical protein
0.8909

8164

hypothetical protein
0.8887

261684

(LEUS) PLN02563
0.8858

ThpsCp082

(rpl34) ribosomal protein L34
0.8829

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_RluCD_like Pseudouridine synthase, RsuA/RluD family; This group is comprised of eukaryotic, bacterial and... cl00130 160.196 1.69E-47 78 - 265 specific 211346
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 160.196 1.69E-47 78 - 265 superfamily 260207
RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis] - 195.607 7.42E-60 68 - 329 multi-dom 223638

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_10284 PHATR_10284 197171 191875 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0009982 GO:0016439 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

GO:0016439

NA

Details: 
NA
GO Category: 
NA

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