269893 TOPRIM_DnaG_primases
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
269893 chr_17 TOPRIM_DnaG_primases 95595 98730 + TOPRIM_DnaG_primases
NCBI ID Ensembl Genomes exon ID
7444170 Thaps269893.2, Thaps269893.3, Thaps269893.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0226
Normalized Mean Residue
Thaps_bicluster_0184
0.33
hypothetical protein
0.9253
hypothetical protein
0.8928
hypothetical protein
0.8882
(Tp_AP2-EREBP9) regulator [Rayko]
0.8855
PRK14329
0.8835
SAC3_GANP
0.8819
hypothetical protein
0.877
hypothetical protein
0.8741
NADB_Rossmann superfamily
0.8724
hypothetical protein
0.8724
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain... cl00718 90.6511 1.48E-21 97 - 183 specific 173784
TOPRIM superfamily Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA,... - 90.6511 1.48E-21 97 - 183 superfamily 260587
Toprim_N superfamily DNA primase catalytic core, N-terminal domain; DNA primase catalytic core, N-terminal domain. - 87.312 6.21E-20 1 - 67 superfamily 254701
Toprim_N superfamily DNA primase catalytic core, N-terminal domain; DNA primase catalytic core, N-terminal domain. - 87.312 6.21E-20 1 - 67 superfamily 254701
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42826 PHATRDRAFT_42826 Not available 62880 Not available Not available Not available Not available
KEGG description KEGG Pathway
Not available Not available
GO:0003676 GO:0006304 GO:0003896 GO:0006269 -

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

DNA modification

Details: 
The covalent alteration of one or more nucleotide sites in DNA, resulting in a change in its properties.
GO Category: 
BP

DNA primase activity

Details: 
Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. Catalyzed by a DNA-directed RNA polymerase that forms a complex with alpha DNA polymerase.
GO Category: 
MF

DNA replication, synthesis of RNA primer

Details: 
The synthesis of a short RNA polymer, usually 4-15 nucleotides long, using one strand of unwound DNA as a template; the RNA then serves as a primer from which DNA polymerases extend synthesis.
GO Category: 
BP
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