28842 PDI_a_familyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
28842	chr_6	PDI_a_family	2006920	2008321	+	PDI_a_family

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446569	Thaps28842.1, Thaps28842.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0471

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0085	0.45	760 12000

Most Highly Correlated Transcripts

12130 hypothetical protein 0.777	11275 hypothetical protein 0.7611	19158 GRX_PICOT_like 0.7582	10927 hypothetical protein 0.745	36007 Aldolase_II superfamily 0.743	268366 Glyco_18 0.7428
30913 PMSR superfamily 0.7414	bd1884 (bd1884) AhpC-TSA_2 0.7398	10673 hypothetical protein 0.7327	264670 Thioredoxin_like superfamily 0.7318

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PDI_a_family		Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic...	cl00388	67.2505	4.21E-15	1 - 68	specific	239259
Thioredoxin_like superfamily		Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; The thioredoxin (TRX...	-	67.2505	4.21E-15	1 - 68	superfamily	260398

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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