29013 PAP1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
29013 chr_7 PAP1 1595701 1597765 + PAP1

Synonyms

NCBI ID Ensembl Genomes exon ID
7447162 Thaps29013.2, Thaps29013.1, Thaps29013.3, Thaps29013.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0373

Most Highly Correlated Transcripts

9108

PRP3 superfamily
0.9042

40200

TRX_reduct
0.9017

267979

HCO3_cotransp superfamily
0.8875

bd1949

(bd1949) NA
0.8866

2622

hypothetical protein
0.8864

38258

ATM1
0.8853

268443

SAICAR_synt_Sc
0.8846

12899

AAA
0.8814

10946

CwfJ_C_1 superfamily
0.8809

10487

hypothetical protein
0.8722

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases; Poly(... cl11966 77.5975 4.26E-17 51 - 125 specific 143392
Rel-Spo_like superfamily RelA- and SpoT-like ppGpp Synthetases and Hydrolases, catalytic domain; The Rel-Spo superfamily... - 77.5975 4.26E-17 51 - 125 superfamily 264491
PAP_RNA-bind superfamily Poly(A) polymerase predicted RNA binding domain; Based on its similarity structurally to the RNA... - 112.359 2.47E-29 342 - 470 superfamily 252881
PAP_RNA-bind superfamily Poly(A) polymerase predicted RNA binding domain; Based on its similarity structurally to the RNA... - 112.359 2.47E-29 342 - 470 superfamily 252881
PAP1 Poly(A) polymerase [RNA processing and modification] - 314.566 9.63E-100 3 - 493 multi-dom 227513

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47826 PHATRDRAFT_47826 157568 174581 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
mRNA surveillance pathway map03015

GO Terms

GO:0003676 GO:0004652 GO:0006350 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004652

polynucleotide adenylyltransferase activity

Details: 
Catalysis of the template-independent extension of the 3'- end of an RNA or DNA strand by addition of one adenosine molecule at a time. Cannot initiate a chain 'de novo'. The primer, depending on the source of the enzyme, may be an RNA or DNA fragment, or oligo(A) bearing a 3'-OH terminal group.
GO Category: 
MF

GO:0006350

NA

Details: 
NA
GO Category: 
NA

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